PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G036700.1
Common NameB456_001G036700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 273aa    MW: 29717.1 Da    PI: 9.2505
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G036700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002282104123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C + F ++  L  H++ H
  Gorai.001G036700.1  82 FSCNYCQRKFYSSQALGGHQNAH 104
                         89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-679109No hitNo description
PROSITE profilePS5015711.42782109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MESVRKEPSP SESTSCVISA PDAPSISDEQ LKKPKPRLQL DLKLSTSDSD VPAFNFNQEL  60
NLIGSLNTPE TPQPADSEQR VFSCNYCQRK FYSSQALGGH QNAHKRERTL AKRAQRIGVH  120
AAFGGHPYFH HNHCSSLASF PLQGPHNRSL GIEVHSSMIH EPSRMISSSA GFGNVYGHPS  180
WSRLPINQQP AIGKLSTENS HAISRPGSTS RASLGRFDNV MRSRMMGLGS SADDGQVIGN  240
SWWSNGGGGG GSLNRKTELQ ERPSDIKFQI LE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6148011e-130JX614801.1 Gossypium hirsutum clone NBRI_GE58454 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449746.10.0PREDICTED: zinc finger protein 3 isoform X1
SwissprotQ392623e-41ZFP3_ARATH; Zinc finger protein 3
TrEMBLA0A0D2LUC40.0A0A0D2LUC4_G
STRINGVIT_04s0008g05930.t011e-83(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-50C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]